Package: AnanseSeurat
Title: Construct ANANSE GRN-Analysis Seurat
Version: 1.2.0
Authors@R: c(
    person(given = "Jos", family ="Smits", email = "Jos.GA.Smits@radboudumc.nl", role = c("aut", "cre","cph"),
           comment = c(ORCID = "0000-0001-5858-3905")),
    person(given =c("Huiqing","Jo"),family ="Zhou", email ="Jo.Zhou@radboudumc.nl", role = c("aut","fnd","cph"),
           comment = c(ORCID = "0000-0002-2434-3986"))
  )
Description: Enables gene regulatory network (GRN) analysis on single
        cell clusters, using the GRN analysis software 'ANANSE', Xu et
        al.(2021) <doi:10.1093/nar/gkab598>. Export data from 'Seurat'
        objects, for GRN analysis by 'ANANSE' implemented in
        'snakemake'. Finally, incorporate results for visualization and
        interpretation.
License: Apache License (>= 2)
BugReports: https://github.com/JGASmits/AnanseSeurat/issues
URL: https://github.com/JGASmits/AnanseSeurat/
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Imports: dplyr, ggplot2, ggpubr, magrittr, patchwork, png, purrr,
        rlang, Seurat, stringr, utils,
Suggests: covr, knitr, rmarkdown, Signac, testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
Depends: R (>= 3.50)
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev python3 zlib1g-dev
Repository: https://jgasmits.r-universe.dev
Date/Publication: 2026-09-09 09:13:01 UTC
RemoteUrl: https://github.com/jgasmits/ananseseurat
RemoteRef: HEAD
RemoteSha: 38ec6a73945c4b2c41626e5111781d168cb9c0d9
NeedsCompilation: no
Packaged: 2026-10-09 10:47:09 UTC; root
Author: Jos Smits [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0001-5858-3905>),
  Huiqing Jo Zhou [aut, fnd, cph] (ORCID:
    <https://orcid.org/0000-0002-2434-3986>)
Maintainer: Jos Smits <Jos.GA.Smits@radboudumc.nl>